Same here: WordPress 3.9, single-site, w3tc 0.9.4, PHP 5.4.25. Other installations on the same server, same setting work just fine (multi and single site). But this site is the only one using CDN (CloudFront/Pull). But disabling CDN doesn't help either. Also my mirrored dev version of the site works fine. This is also my oldest wordpress installation, like diegosalcido mentioned before.
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